PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_180.6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 116aa    MW: 13300.9 Da    PI: 8.4918
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_180.6genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.51.7e-1094115122
                                  ---SS-EEEEEEE--TT-SS-E CS
                         WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                                  ldDgy+WrKYGqK vk+s  pr
  evm.model.supercontig_180.6  94 LDDGYRWRKYGQKFVKNSVQPR 115
                                  59*****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-1180115IPR003657WRKY domain
SuperFamilySSF1182909.81E-987115IPR003657WRKY domain
PROSITE profilePS5081112.89789115IPR003657WRKY domain
PfamPF031061.4E-695115IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MDLDITLPII TQLDDISCLI SFHTQDRTVH HEQDLDWVNI SAPDQYDDQP PPRLVNNGGD  60
IRNVRGKNKG KNSITRKTTT PRIAFHTRSA DDILDDGYRW RKYGQKFVKN SVQPR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896460.17e-20PREDICTED: probable WRKY transcription factor 24
STRINGPOPTR_0014s08640.15e-16(Populus trichocarpa)
STRINGVIT_15s0046g02150.t012e-15(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.11e-16WRKY DNA-binding protein 56